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BaseInfo

ncRNA ID	novel_bra_miR568
Species	Brassica rapa
Class	miRNA
Genome position	ChrA3:22360196-22360310 [+]
Reference genome	Brapa_1.0
Source	SRR1776880
Length	24
Mature sequence(if miRNA)	92 - GAAGAAGACAAGAAAACGCAGAUG - 115
Stem-loop(if miRNA)	--                     U     G                   AUC     UC   UCUGUGUUUUCUUGUCUUCUU CAAAA AAUGAAUCAUAAGUUGUGA   UUGAA  G   ||||||||||||||||||||| ||||| |||||||||||||||||||   |||||  U   AGACGCAAAAGAACAGAAGAA GUUUU UUACUUAGUAUUCAACACU   AAUUU  U GU                     -     A                   ---     UC
Stem-loop sequence	UCUGUGUUUUCUUGUCUUCUUUCAAAAGAAUGAAUCAUAAGUUGUGAAUCUUGAAUCGUUCUUUUAAUCACAACUUAUGAUUCAUUAUUUUGAAGAAGACAAGAAAACGCAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009150351.2	ncRNA:24   GUAGACGCAAAAGAACAGAAGAAG   1   |*|||*|*|||||||||||||||| targets:195   CCUCUCCUUUUUCUUGUCUUCUUC   218 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103872010 (LOC103872010), mRNA	uncharacterized LOC103872010(LOC103872010)	coding protein	psRNATarget
XM_009138775.2	ncRNA:24   GUAGACGCAAAAGAACAGAAGAAG   1   =*|=||=||||*|||||||||||| targets:1496   UCUUUGUGUUUCCUUGUCUUCUUC   1519 Target Full Sequence	2.5	PREDICTED: Brassica rapa potassium transporter 9-like (LOC103861067), transcript variant X1, mRNA	potassium transporter 9-like(LOC103861067)	coding protein	psRNATarget
XM_009138776.2	ncRNA:24   GUAGACGCAAAAGAACAGAAGAAG   1   =*|=||=||||*|||||||||||| targets:1488   UCUUUGUGUUUCCUUGUCUUCUUC   1511 Target Full Sequence	2.5	PREDICTED: Brassica rapa potassium transporter 9-like (LOC103861067), transcript variant X2, mRNA	potassium transporter 9-like(LOC103861067)	coding protein	psRNATarget
XM_018657240.1	ncRNA:24   GUAGACGCAAAAGAACAGAAGAAG   1   =*|=||=||||*|||||||||||| targets:1506   UCUUUGUGUUUCCUUGUCUUCUUC   1529 Target Full Sequence	2.5	PREDICTED: Brassica rapa potassium transporter 9-like (LOC103861067), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009142493.2	ncRNA:24   GUAGACGCAAAAGAACAGAAGAAG   1   *=|=*|=|||||=||||||||||| targets:362   GGUUGGUGUUUUUUUGUCUUCUUC   385 Target Full Sequence	2.5	PREDICTED: Brassica rapa S-adenosylmethionine mitochondrial carrier protein (LOC103864733), mRNA	S-adenosylmethionine mitochondrial carrier protein(LOC103864733)	coding protein	psRNATarget