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BaseInfo

ncRNA ID novel_bra_miR567
Species Brassica rapa
Class miRNA
Genome position ChrA5:19622702-19622756 [+]
Reference genome Brapa_1.0
Source SRR1161445;SRR1160826
Length 24
Mature sequence(if miRNA) 32 - AGCCUGGCUCUGAUACCAUGAAGU - 55
Stem-loop(if miRNA) --UA          A     U      
    CGUGGUAUCA AGCCA GUUAUCA
    |||||||||| ||||| ||||||U
    GUACCAUAGU UCGGU CGAUAGU
UGAA          C     C      
Stem-loop sequence UACGUGGUAUCAAAGCCAUGUUAUCAUUGAUAGCCUGGCUCUGAUACCAUGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009125894.1
ncRNA:24   UGAAGUACCAUAGUCUCGGUCCGA   1
  *=**=|||||||||||||||||=|
targets:93   CUAAUAUGGUAUCAGAGCCAGGUU   116

1.5 PREDICTED: Brassica rapa uncharacterized LOC103849074 (LOC103849074), mRNA uncharacterized LOC103849074(LOC103849074) coding protein psRNATarget
XM_009141618.2
ncRNA:24   UGAAGUACCAUAGUCUCGGUCCGA   1
  =***||||*|||||||||||||*|
targets:878   GGAGCAUGAUAUCAGAGCCAGGAU   901

2.5 PREDICTED: Brassica rapa uncharacterized LOC103863824 (LOC103863824), mRNA uncharacterized LOC103863824(LOC103863824) coding protein psRNATarget