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BaseInfo

ncRNA ID novel_bra_miR566
Species Brassica rapa
Class miRNA
Genome position ChrA3:18453762-18453849 [+]
Reference genome Brapa_1.0
Source SRR1776880
Length 23
Mature sequence(if miRNA) 1 - UCUGAACCCUUGGAUAAAUCAUA - 23
Stem-loop(if miRNA) --                           C    -GUUU   UU
  UCUGAACCCUUGGAUAAAUCAUAAACU UAGA     AAU  U
  ||||||||||||||||||||||||||| ||||     |||  A
  GGACUUGGGAACCUAUUUAGUAUUUGA AUUU     UUA  A
UG                           C    AGUUU   UA
Stem-loop sequence UCUGAACCCUUGGAUAAAUCAUAAACUCUAGAGUUUAAUUUUAAAUAUUUUUGAUUUACAGUUUAUGAUUUAUCCAAGGGUUCAGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB326958.1
ncRNA:23   AUACUAA-AUAGGUUCCCAAGUCU   1
  |=|*|*|-||||||||||||||||
targets:919   UGUAACUGUAUCCAAGGGUUCAGA   942

3.0 Brassica rapa SLG-53 gene for S-locus glycoprotein, partial cds NA coding protein psRNATarget