ncRNA ID | novel_bra_miR565 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:4311130-4311217 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776880 |
Length | 23 |
Mature sequence(if miRNA) | 1 - UCUGAACCCUUGGAUAAAUCAUA - 23 |
Stem-loop(if miRNA) |
--                           G  AAUCAAAAAUAU   UCUGAACCCUUGGAUAAAUCAUAAACU UA            U   ||||||||||||||||||||||||||| ||   GGACUUGGGAACCUAUUUAGUAUUUGA AU            U UG                           G  CUCAAAUUAAAA |
Stem-loop sequence | UCUGAACCCUUGGAUAAAUCAUAAACUGUAAAUCAAAAAUAUUUAAAAUUAAACUCUAGAGUUUAUGAUUUAUCCAAGGGUUCAGGGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AB326958.1 |
|
3.0 | Brassica rapa SLG-53 gene for S-locus glycoprotein, partial cds | NA | coding protein | psRNATarget |