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BaseInfo

ncRNA ID novel_bra_miR565
Species Brassica rapa
Class miRNA
Genome position ChrA2:4311130-4311217 [+]
Reference genome Brapa_1.0
Source SRR1776880
Length 23
Mature sequence(if miRNA) 1 - UCUGAACCCUUGGAUAAAUCAUA - 23
Stem-loop(if miRNA) --                           G  AAUCAAAAAUAU
  UCUGAACCCUUGGAUAAAUCAUAAACU UA            U
  ||||||||||||||||||||||||||| ||
  GGACUUGGGAACCUAUUUAGUAUUUGA AU            U
UG                           G  CUCAAAUUAAAA
Stem-loop sequence UCUGAACCCUUGGAUAAAUCAUAAACUGUAAAUCAAAAAUAUUUAAAAUUAAACUCUAGAGUUUAUGAUUUAUCCAAGGGUUCAGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB326958.1
ncRNA:23   AUACUAA-AUAGGUUCCCAAGUCU   1
  |=|*|*|-||||||||||||||||
targets:919   UGUAACUGUAUCCAAGGGUUCAGA   942

3.0 Brassica rapa SLG-53 gene for S-locus glycoprotein, partial cds NA coding protein psRNATarget