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BaseInfo

ncRNA ID	novel_bra_miR558
Species	Brassica rapa
Class	miRNA
Genome position	ChrA4:346446-346518 [+]
Reference genome	Brapa_1.0
Source	SRR1161445
Length	21
Mature sequence(if miRNA)	53 - ACAAUGAACGAAAUCCAAAUC - 73
Stem-loop(if miRNA)	--           G           AAA     UUG   UUUGGAUUUUG UCAUUGUUGGG   GGUUC   A   ||||||||||| |||||||||||   |||||   A   AAACCUAAAGC AGUAACAACCU   UCAAG   C CU           A           AAA     UAA
Stem-loop sequence	UUUGGAUUUUGGUCAUUGUUGGGAAAGGUUCUUGAACAAUGAACUAAAUCCAACAAUGAACGAAAUCCAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009119528.2	ncRNA:21   CUAAACCUAAAGCAAGUAACA   1   **||||||||||||||||*|| targets:632   CUUUUGGAUUUCGUUCAUGGU   652 Target Full Sequence	1.5	PREDICTED: Brassica rapa wall-associated receptor kinase-like 5 (LOC103842861), transcript variant X2, mRNA	wall-associated receptor kinase-like 5(LOC103842861)	coding protein	psRNATarget
XM_009119529.2	ncRNA:21   CUAAACCUAAAGCAAGUAACA   1   **||||||||||||||||*|| targets:618   CUUUUGGAUUUCGUUCAUGGU   638 Target Full Sequence	1.5	PREDICTED: Brassica rapa wall-associated receptor kinase-like 5 (LOC103842861), transcript variant X3, mRNA	wall-associated receptor kinase-like 5(LOC103842861)	coding protein	psRNATarget
XM_009112210.1	ncRNA:21   CUAAACCUAAAGCAAGUAACA   1   **||||||||||||||||*|* targets:611   CUUUUGGAUUUCGUUCAUGGG   631 Target Full Sequence	2.5	PREDICTED: Brassica rapa serine incorporator 3-like (LOC103836002), transcript variant X1, mRNA	serine incorporator 3-like(LOC103836002)	coding protein	psRNATarget
XM_009112211.2	ncRNA:21   CUAAACCUAAAGCAAGUAACA   1   **||||||||||||||||*|* targets:608   CUUUUGGAUUUCGUUCAUGGG   628 Target Full Sequence	2.5	PREDICTED: Brassica rapa serine incorporator 3-like (LOC103836002), transcript variant X2, mRNA	serine incorporator 3-like(LOC103836002)	coding protein	psRNATarget