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BaseInfo

ncRNA ID	novel_bra_miR552
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:11898022-11898139 [-]
Reference genome	Brapa_1.0
Source	SRR1776877;SRR1777714
Length	23
Mature sequence(if miRNA)	1 - AAAGAGAGAGGGAUCAGUAAAAG - 23
Stem-loop(if miRNA)	--UUA             C  CC      ------   CU     ---U     UAGUA     U      GCUGGUCUCUCUC CU  CUCUCU      CGA  CUAUC    UUUAG     CUAAU U      ||||||||||||| ||  ||||||      |||  |||||    |||||     |||||      UGACUAGGGAGAG GA  GAGAGA      GUU  GGUGG    AGAUU     GAUUA U GAAAA             A  AA      UAUCUU   UG     UUUU     ---UG     A
Stem-loop sequence	UUAGCUGGUCUCUCUCCCUCCCUCUCUCGACUCUAUCUUUUAGUAGUACUAAUUUUAAUUAGGUUUAGAUUUUGGUGGGUUUGUUCUAUAGAGAGAAAGAGAGAGGGAUCAGUAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009117773.2	ncRNA:23   GAAAAUGACUAGGGAGAGAGAAA   1   ||*|||||**||||||||||||| targets:22   CUCUUACUCUUCCCUCUCUCUUU   44 Target Full Sequence	2.0	PREDICTED: Brassica rapa cytochrome P450 71B5 (LOC103841254), transcript variant X1, mRNA	cytochrome P450 71B5(LOC103841254)	coding protein	psRNATarget
XM_018654735.1	ncRNA:23   GAAAAUGACUAGGGAGAGAGAAA   1   ||*|||||**||||||||||||| targets:22   CUCUUACUCUUCCCUCUCUCUUU   44 Target Full Sequence	2.0	PREDICTED: Brassica rapa cytochrome P450 71B5 (LOC103841254), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009144943.2	ncRNA:23   GAAAAUGACUAGGGAGAGAGAAA   1   |****||||||||=||||||||| targets:55   CCAAAACUGAUCCUUCUCUCUUU   77 Target Full Sequence	2.5	PREDICTED: Brassica rapa random slug protein 5-like (LOC103866906), mRNA	random slug protein 5-like(LOC103866906)	coding protein	psRNATarget