Search result

BaseInfo

ncRNA ID	novel_bra_miR551
Species	Brassica rapa
Class	miRNA
Genome position	ChrA4:18126795-18126891 [+]
Reference genome	Brapa_1.0
Source	SRR1161445;SRR1160826
Length	21
Mature sequence(if miRNA)	1 - AAUUUGCUCCAAUGGUUCACC - 21
Stem-loop(if miRNA)	--                    C   C                 UUUC   AAUUUGCUCCAAUGGUUCAC CUA AAUAGAGUUACUCUAUA    A   |||||||||||||||||||| ||| |||||||||||||||||    C   UUAAACGAGGUUACCAAGUG GAU UUAUCUCAAUGAGAUAU    U AC                    A   A                 UAUC
Stem-loop sequence	AAUUUGCUCCAAUGGUUCACCCUACAAUAGAGUUACUCUAUAUUUCACUCUAUUAUAGAGUAACUCUAUUAUAGAGUGAACCAUUGGAGCAAAUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018659527.1	ncRNA:21   CCACUUGGUAACCUCGUUUAA   1   *|||||||||||||*|||||* targets:102   UGUGAACCAUUGGAUCAAAUA   122 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103873328 (LOC103873328), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018657839.1	ncRNA:21   CCACUUGGUAACCUCGUUUAA   1   *|||||||||||||*|||||* targets:111   UGUGAACCAUUGGAUCAAAUA   131 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103861142 (LOC103861142), mRNA	NA	coding protein	psRNATarget
XM_018659528.1	ncRNA:21   CCACUUGGUAACCUCGUUUAA   1   *|||||||||||||*|||||* targets:102   UGUGAACCAUUGGAUCAAAUA   122 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103873328 (LOC103873328), transcript variant X2, mRNA	NA	coding protein	psRNATarget