Search result

BaseInfo

ncRNA ID	novel_bra_miR550
Species	Brassica rapa
Class	miRNA
Genome position	ChrA9:7413436-7413523 [+]
Reference genome	Brapa_1.0
Source	SRR1776877;SRR2912891;SRR2912894
Length	21
Mature sequence(if miRNA)	68 - UAGUGGAAGCAGCAACGAGAA - 88
Stem-loop(if miRNA)	--   U     C         U     --      --     CAAC   CUU UUGCU CUUUCACUA GUGAU  ACCUUU  GCCUU    C   ||| ||||| ||||||||| |||||  ||||||  |||||   GAG AACGA GAAGGUGAU CAUUA  UGGAAA  CGGAA    U AA   C     C         U     CU      UU     AAUU
Stem-loop sequence	CUUUUUGCUCCUUUCACUAUGUGAUACCUUUGCCUUCAACCUUUAAAAGGCUUAAAGGUUCAUUACUUAGUGGAAGCAGCAACGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009109106.2	ncRNA:21   AAGAGCAACGACGAAGGUGAU   1   **|||||||||||*||||||| targets:1671   AGCUCGUUGCUGCCUCCACUA   1691 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable inactive receptor kinase At1g48480 (LOC103833000), mRNA	probable inactive receptor kinase At1g48480(LOC103833000)	coding protein	psRNATarget
XM_009131044.2	ncRNA:21   AAGAGCAACGACGAAGGUGAU   1   *|=|||*|||||||||||||= targets:752   CUUUCGGUGCUGCUUCCACUG   772 Target Full Sequence	3.0	PREDICTED: Brassica rapa exocyst complex component EXO70B1-like (LOC103854132), transcript variant X2, mRNA	exocyst complex component EXO70B1-like(LOC103854132)	coding protein	psRNATarget
XM_009131043.2	ncRNA:21   AAGAGCAACGACGAAGGUGAU   1   *|=|||*|||||||||||||= targets:748   CUUUCGGUGCUGCUUCCACUG   768 Target Full Sequence	3.0	PREDICTED: Brassica rapa exocyst complex component EXO70B1-like (LOC103854132), transcript variant X1, mRNA	exocyst complex component EXO70B1-like(LOC103854132)	coding protein	psRNATarget