Search result

BaseInfo

ncRNA ID novel_bra_miR549
Species Brassica rapa
Class miRNA
Genome position ChrA1:2171150-2171330 [-]
Reference genome Brapa_1.0
Source SRR1776877
Length 25
Mature sequence(if miRNA) 1 - UAAUUGUGGGCUUAAAGCAUAUUGA - 25
Stem-loop(if miRNA) --             GG    C         GC A   A               -----U                          ------   G
  AAUAUGUUUUAAG  CACA UUAUCAUAA  C AAA UCAGAUAAUUAAUUG      AAACUAUGCAUUGUUUAUAAUUAAAG      ACA U
  |||||||||||||  |||| |||||||||  | ||| |||||||||||||||      ||||||||||||||||||||||||||      |||
  UUAUACGAAAUUC  GUGU AAUAGUAUU  G UUU AGUCUAUUGAUUAAC      UUUGAUACGUAACAAAUAUUGAUUUU      UGU G
AG             GG    U         AA C   A               UGAUAU                          ACCUUA   A
Stem-loop sequence AAUAUGUUUUAAGGGCACACUUAUCAUAAGCCAAAAAUCAGAUAAUUAAUUGUAAACUAUGCAUUGUUUAUAAUUAAAGACAGUGAUGUAUUCCAUUUUAGUUAUAAACAAUGCAUAGUUUUAUAGUCAAUUAGUUAUCUGAAUUUCGAAUUAUGAUAAUUGUGGGCUUAAAGCAUAUUGA