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BaseInfo

ncRNA ID novel_bra_miR546
Species Brassica rapa
Class miRNA
Genome position ChrA1:8344608-8344722 [-]
Reference genome Brapa_1.0
Source SRR1776877;SRR1776899
Length 24
Mature sequence(if miRNA) 1 - AAGUUAAGAGACGGAUUCUUAUAU - 24
Stem-loop(if miRNA) --AUAAAAAA             UU      A  A           GA  C       
          CCGUUUUUUAACU  UAACUA AA AGCUAAGAACU  CU UUAAAUAA
          |||||||||||||  |||||| || |||||||||||  || |||||||A
          GGCAGAGAAUUGA  AUUGAU UU UCGAUUCUUGG  GA AAUUUAUA
UAUAUUCUUA             --      C  A           UC  A       
Stem-loop sequence AUAAAAAACCGUUUUUUAACUUUUAACUAAAAAAGCUAAGAACUGACUCUUAAAUAAAAUAUUUAAAAGCUGGUUCUUAGCUAUUCUAGUUAAGUUAAGAGACGGAUUCUUAUAU