ncRNA ID | novel_bra_miR546 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:8344608-8344722 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776877;SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGUUAAGAGACGGAUUCUUAUAU - 24 |
Stem-loop(if miRNA) |
--AUAAAAAA             UU      A  A           GA  C                  CCGUUUUUUAACU  UAACUA AA AGCUAAGAACU  CU UUAAAUAA           |||||||||||||  |||||| || |||||||||||  || |||||||A           GGCAGAGAAUUGA  AUUGAU UU UCGAUUCUUGG  GA AAUUUAUA UAUAUUCUUA             --      C  A           UC  A        |
Stem-loop sequence | AUAAAAAACCGUUUUUUAACUUUUAACUAAAAAAGCUAAGAACUGACUCUUAAAUAAAAUAUUUAAAAGCUGGUUCUUAGCUAUUCUAGUUAAGUUAAGAGACGGAUUCUUAUAU |