ncRNA ID | novel_bra_miR544 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA8:18100000-18100151 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776877;SRR1776880;SRR1776889;SRR1776899;SRR1777714 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AUUAUGGAAUGGGGUUGGAGAUA - 23 |
Stem-loop(if miRNA) |
--      U               U   U     AUA     A        A  UAAACAA          C      U   UCUCUA CUCCAUUUCAUAAUU ACU CAAAA   GAGUG AAAAUAGA UA       AAAAAAAAAU ACUCUA U   |||||| ||||||||||||||| ||| |||||   ||||| |||||||| ||       |||||||||| ||||||   AGAGGU GGGGUAAGGUAUUAA UGA GUUUU   UUCAU UUUUAUCU AU       UUUUUUUUUA UGAGAU U AU      U               -   C     -AC     C        C  ----UAC          A      A |
Stem-loop sequence | UCUCUAUCUCCAUUUCAUAAUUUACUUCAAAAAUAGAGUGAAAAAUAGAAUAUAAACAAAAAAAAAAAUCACUCUAUUUAUAGAGUAAUUUUUUUUUCAUUACUCUAUUUUCUACUUCAUUUUGCAGUAAUUAUGGAAUGGGGUUGGAGAUA |