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BaseInfo

ncRNA ID novel_bra_miR542
Species Brassica rapa
Class miRNA
Genome position ChrA8:6207075-6207200 [+]
Reference genome Brapa_1.0
Source SRR1776877;SRR1776889
Length 23
Mature sequence(if miRNA) 104 - UUACAAGUAAGUCGUCUGGUUUA - 126
Stem-loop(if miRNA) --AAA            A           CA  A      AA     GA CGGAAAAUUAAAU
     CAGACGACUUAC UGUAAGUCGUC  GA GAGUUU  UAUUU  G             A
     |||||||||||| |||||||||||  || ||||||  |||||  |             U
     GUCUGCUGAAUG ACAUUCAGCAG  CU UUCAGA  AUAAA  C             U
AUUUG            A           AC  -      AG     AU AAAGGGCGAUUUU
Stem-loop sequence AAACAGACGACUUACAUGUAAGUCGUCCAGAAGAGUUUAAUAUUUGAGCGGAAAAUUAAAUAUUUUUUAGCGGGAAACUAAAAUAGAAGACUUUCCAGACGACUUACAAGUAAGUCGUCUGGUUUA