ncRNA ID | novel_bra_miR541 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:795918-796087 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1161445 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGUGCUACCGGUAUCCACGUGAA - 24 |
Stem-loop(if miRNA) |
--   U     CG     C         ---------     G           -----           G     U        CC   CC   AGG GCUAC  GUAUC ACGUGAAGA         UUACA AAGGUGAACCA     AACUAGAUUUU GUUAU AACGCAAG  CUU  C   ||| |||||  ||||| |||||||||         ||||| |||||||||||     ||||||||||| ||||| ||||||||  |||   UUC CGAUG  CAUAG UGCACUUUU         AAUGU UUCCACUUGGU     UUGAUCUAAAG CGAUA UUGUGUUC  GAA  G GU   U     UA     U         CUAUAACGA     G           GUGGU           G     U        AA   AC |
Stem-loop sequence | AGGUGCUACCGGUAUCCACGUGAAGAUUACAGAAGGUGAACCAAACUAGAUUUUGGUUAUUAACGCAAGCCCUUCCCGCAAAGAACUUGUGUUUAUAGCGGAAAUCUAGUUUGGUGUGGUUCACCUUGUGUAAAGCAAUAUCUUUUCACGUUGAUACAUGUAGCUCUUUG |