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BaseInfo

ncRNA ID novel_bra_miR541
Species Brassica rapa
Class miRNA
Genome position ChrA3:795918-796087 [+]
Reference genome Brapa_1.0
Source SRR1161445
Length 24
Mature sequence(if miRNA) 1 - AGGUGCUACCGGUAUCCACGUGAA - 24
Stem-loop(if miRNA) --   U     CG     C         ---------     G           -----           G     U        CC   CC
  AGG GCUAC  GUAUC ACGUGAAGA         UUACA AAGGUGAACCA     AACUAGAUUUU GUUAU AACGCAAG  CUU  C
  ||| |||||  ||||| |||||||||         ||||| |||||||||||     ||||||||||| ||||| ||||||||  |||
  UUC CGAUG  CAUAG UGCACUUUU         AAUGU UUCCACUUGGU     UUGAUCUAAAG CGAUA UUGUGUUC  GAA  G
GU   U     UA     U         CUAUAACGA     G           GUGGU           G     U        AA   AC
Stem-loop sequence AGGUGCUACCGGUAUCCACGUGAAGAUUACAGAAGGUGAACCAAACUAGAUUUUGGUUAUUAACGCAAGCCCUUCCCGCAAAGAACUUGUGUUUAUAGCGGAAAUCUAGUUUGGUGUGGUUCACCUUGUGUAAAGCAAUAUCUUUUCACGUUGAUACAUGUAGCUCUUUG