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BaseInfo

ncRNA ID novel_bra_miR536
Species Brassica rapa
Class miRNA
Genome position ChrA6:24620144-24620327 [-]
Reference genome Brapa_1.0
Source SRR1776877
Length 23
Mature sequence(if miRNA) 1 - AGUGAACCAUUAGAGCAAAUUCA - 23
Stem-loop(if miRNA) --         A   U     G  UCUC         G   C         G   U       A         -A               AUAG
  GAUUUGUUC AAU GUUCA UU    UAUAAUAGA UUA UUUGUAAUA AGU AAAUAUA AGUAAUGUU  UUUUUUUACUCUAUA    A
  ||||||||| ||| ||||| ||    ||||||||| ||| ||||||||| ||| ||||||| |||||||||  |||||||||||||||    G
  UUAAACGAG UUA CAAGU AA    AUAUUAUCU AAU AGAUAUUAU UCA UUUAUAU UUAUUACAA  AAAAAAAUGAGGUAU    U
AC         A   C     G  ----         A   A         A   C       C         CA               AAAA
Stem-loop sequence GAUUUGUUCAAAUUGUUCAGUUUCUCUAUAAUAGAGUUACUUUGUAAUAGAGUUAAAUAUAAAGUAAUGUUAUUUUUUUACUCUAUAAUAGAGUAAAAUAUGGAGUAAAAAAAACAACAUUAUUCUAUAUUUCACUAUAUUAUAGAAUAAAUCUAUUAUAAAGUGAACCAUUAGAGCAAAUUCA