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BaseInfo

ncRNA ID ath-miR5014a-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:24553909-24554049 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 22 - ACACUUAGUUUUGUACAACAU - 42
Stem-loop(if miRNA)         CUA                  U                        A  AAA   A     A
AUUUUUUA   UUUGAUUCGUACACUUAG UUUGUACAACAUUUUUAGUGUACA AU   UAA UGUAC C
||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||   ||| ||||| A
UGAAAAGU   AAACUAAGCAUGUGAAUU AAACAUGUUGUGAAAAUCACAUGU UA   AUU ACAUG G
        AUC                  U                        C  --C   C     C
Stem-loop sequence AUUUUUUACUAUUUGAUUCGUACACUUAGUUUUGUACAACAUUUUUAGUGUACAAAUAAAUAAAUGUACACAGCGUACACUUACAUCUGUACACUAAAAGUGUUGUACAAAUUUAAGUGUACGAAUCAAACUAUGAAAAGU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).
2 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).