ncRNA ID | ath-miR5014a-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:24553909-24554049 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 22 - ACACUUAGUUUUGUACAACAU - 42 |
Stem-loop(if miRNA) |
        CUA                  U                        A  AAA   A     A AUUUUUUA   UUUGAUUCGUACACUUAG UUUGUACAACAUUUUUAGUGUACA AU   UAA UGUAC C ||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||   ||| ||||| A UGAAAAGU   AAACUAAGCAUGUGAAUU AAACAUGUUGUGAAAAUCACAUGU UA   AUU ACAUG G         AUC                  U                        C  --C   C     C |
Stem-loop sequence | AUUUUUUACUAUUUGAUUCGUACACUUAGUUUUGUACAACAUUUUUAGUGUACAAAUAAAUAAAUGUACACAGCGUACACUUACAUCUGUACACUAAAAGUGUUGUACAAAUUUAAGUGUACGAAUCAAACUAUGAAAAGU |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |
2 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |