ncRNA ID | novel_bra_miR533 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:21322003-21322155 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776877;SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 130 - ACUGGAUUUUUAGUUGAGGGUUUU - 153 |
Stem-loop(if miRNA) |
--AAA                                     UGGUU          A              UAAA      CUUCAACUAAAAAUCCAGUGAAAUAAACCCUCAACUU     CCGUUAACAU UGUUACCCUCCGUC    A      |||||||||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||    A      GGAGUUGAUUUUUAGGUCACUUUAUUUGGGAGUUGAA     GGCAAUUGUA ACAAUGGGAGGCAG    A UUUUG                                     UAUUU          A              UGCC |
Stem-loop sequence | AAACUUCAACUAAAAAUCCAGUGAAAUAAACCCUCAACUUUGGUUCCGUUAACAUAUGUUACCCUCCGUCUAAAAAACCGUGACGGAGGGUAACAAAUGUUAACGGUUUAUAAGUUGAGGGUUUAUUUCACUGGAUUUUUAGUUGAGGGUUUU |