ncRNA ID | novel_bra_miR530 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:2451065-2451257 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776877 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGGGGUUAACACAUAGAUUUUGA - 24 |
Stem-loop(if miRNA) |
--A            A      U        U                  U      U                  G      C   UG UG  GAU    GGGGGUUAACAC UAGAUU UGAGAAAA UUCAAAAAAUAUGAUAAU UUGUUU AAUGCAUAGUUGUAUCAU AACUAA AUA  A  AU   C    |||||||||||| |||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||| |||||| |||  |  ||    UCCCCAAUUGUG AUCUAA AUUCUUUU AAGUUUUUUAUACUAUUA AAUAAA UUACGUAUCAACAUAGUA UUGAUU UAU  U  UA   A ACA            C      C        U                  U      -                  A      U   GU UG  GAA |
Stem-loop sequence | AGGGGGUUAACACAUAGAUUUUGAGAAAAUUUCAAAAAAUAUGAUAAUUUUGUUUUAAUGCAUAGUUGUAUCAUGAACUAACAUAUGAUGAUGAUCAAAGAUGUUUGUAUUUUAGUUAAUGAUACAACUAUGCAUUAAAUAAUAUUAUCAUAUUUUUUGAAUUUUUCUUACAAUCUACGUGUUAACCCCUACA |