Search result

BaseInfo

ncRNA ID	ath-miRf10764-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGAAGAUGAAGCUGUUCUG - NA
Stem-loop(if miRNA)	AG        AA    --U  -   A    UUCA GGG  AGAAGAUG  GCUG   UC UGC UCUC    A |||  ||||||||  ||||   || ||| |||| CCC  UCUUCUAC  CGAC   AG AUG AGAG    A    GG        CC    UGU  U   A    UUUC
Stem-loop sequence	GGGAGAGAAGAUGAAGCUGUUCUGCAUCUCUUCAAACUUUGAGAAGUAUGAUGUCAGCCCCAUCUUCUGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_113669.3	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||||||||| targets:2070   CAGAACAGCUUCAUCUUCUC   2089 Target Full Sequence	0.0	Arabidopsis thaliana golgin Putative 6 (GC6), mRNA	golgin Putative 6(GC6)	coding protein	psRNATarget
EU249327.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||||||||| targets:1843   CAGAACAGCUUCAUCUUCUC   1862 Target Full Sequence	0.0	Arabidopsis thaliana putative p115-like protein (GC6) mRNA, complete cds	NA	coding protein	psRNATarget
AY056118.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||||||||| targets:1273   CAGAACAGCUUCAUCUUCUC   1292 Target Full Sequence	0.0	Arabidopsis thaliana AT3g27530/MMJ24_7 mRNA, complete cds	NA	coding protein	psRNATarget
BT001017.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||||||||| targets:616   CAGAACAGCUUCAUCUUCUC   635 Target Full Sequence	0.0	Arabidopsis thaliana At3g27530/MMJ24_7 mRNA, complete cds	NA	coding protein	psRNATarget
NM_121581.3	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||*|||||| targets:149   CAGAACAGCUUCACCUUCUC   168 Target Full Sequence	1.5	Arabidopsis thaliana Ribosomal protein PSRP-3/Ycf65 (PSRP3/2), mRNA	Ribosomal protein PSRP-3/Ycf65(PSRP3/2)	coding protein	psRNATarget
AK117858.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||*|||||| targets:84   CAGAACAGCUUCACCUUCUC   103 Target Full Sequence	1.5	Arabidopsis thaliana At5g15760 mRNA for putative ribosomal protein 3 precursor, complete cds, clone: RAFL19-02-C10	NA	coding protein	psRNATarget
BT003711.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   |||||||||||||*|||||| targets:39   CAGAACAGCUUCACCUUCUC   58 Target Full Sequence	1.5	Arabidopsis thaliana At5g15760 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001334378.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   =|*||||||||=|||||||| targets:3704   UACAACAGCUUUAUCUUCUC   3723 Target Full Sequence	2.5	Arabidopsis thaliana ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein partial mRNA	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein(AT1G68710)	coding protein	psRNATarget
NM_130012.4	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   ==||||*||||||||||||= targets:295   UGGAACUGCUUCAUCUUCUU   314 Target Full Sequence	3.0	Arabidopsis thaliana Glycosyl hydrolase superfamily protein (PEN2), mRNA	Glycosyl hydrolase superfamily protein(PEN2)	coding protein	psRNATarget
AY091016.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   ==||||*||||||||||||= targets:164   UGGAACUGCUUCAUCUUCUU   183 Target Full Sequence	3.0	Arabidopsis thaliana putative beta-glucosidase (At2g44490) mRNA, complete cds	NA	coding protein	psRNATarget
BT000990.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   ==||||*||||||||||||= targets:75   UGGAACUGCUUCAUCUUCUU   94 Target Full Sequence	3.0	Arabidopsis thaliana clone U18716 putative beta-glucosidase (At2g44490) mRNA, complete cds	NA	coding protein	psRNATarget
NM_202550.2	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   *||||=*||||||||||||= targets:304   AAGAAUCGCUUCAUCUUCUU   323 Target Full Sequence	3.0	Arabidopsis thaliana senescence associated gene 20 (SAG20), mRNA	senescence associated gene 20(SAG20)	coding protein	psRNATarget
AY045972.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   *||||=*||||||||||||= targets:11   AAGAAUCGCUUCAUCUUCUU   30 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At3g10980) mRNA, complete cds	NA	coding protein	psRNATarget
AY088170.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   *||||=*||||||||||||= targets:12   AAGAAUCGCUUCAUCUUCUU   31 Target Full Sequence	3.0	Arabidopsis thaliana clone 4243 mRNA, complete sequence	NA	coding protein	psRNATarget
BT000768.1	ncRNA:20   GUCUUGUCGAAGUAGAAGAG   1   *||||=*||||||||||||= targets:13   AAGAAUCGCUUCAUCUUCUU   32 Target Full Sequence	3.0	Arabidopsis thaliana clone RAFL08-13-M21 (R11251) unknown protein (At3g10980) mRNA, complete cds	NA	coding protein	psRNATarget