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BaseInfo

ncRNA ID	novel_bra_miR522
Species	Brassica rapa
Class	miRNA
Genome position	ChrA3:24671172-24671228 [-]
Reference genome	Brapa_1.0
Source	SRR1776877
Length	24
Mature sequence(if miRNA)	1 - AGAAGAAAAAAUAGAGUAGAGAUG - 24
Stem-loop(if miRNA)	--     U       A   A      CUC   UUUCU ACUCUAU UUU CUUUUA   U   ||||| ||||||| ||| ||||||   AGAGA UGAGAUA AAA GAAGAU   A GU     -       A   A      UUU
Stem-loop sequence	UUUCUUACUCUAUAUUUACUUUUACUCUAUUUUAGAAGAAAAAAUAGAGUAGAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009127077.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   |||=||||=||||||||*|||||| targets:1425   CAUUUCUAUUCUAUUUUAUCUUCU   1448 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein UPSTREAM OF FLC (LOC103850340), transcript variant X1, mRNA	protein UPSTREAM OF FLC(LOC103850340)	coding protein	psRNATarget
XM_009127078.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   |||=||||=||||||||*|||||| targets:1394   CAUUUCUAUUCUAUUUUAUCUUCU   1417 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein UPSTREAM OF FLC (LOC103850340), transcript variant X2, mRNA	protein UPSTREAM OF FLC(LOC103850340)	coding protein	psRNATarget
XM_009137083.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   =*|=|=|*=||||||||||||||| targets:347   UUUUUUUUUUCUAUUUUUUCUUCU   370 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein indeterminate-domain 11-like (LOC103859537), transcript variant X5, mRNA	protein indeterminate-domain 11-like(LOC103859537)	coding protein	psRNATarget
XM_009137082.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   =*|=|=|*=||||||||||||||| targets:347   UUUUUUUUUUCUAUUUUUUCUUCU   370 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein indeterminate-domain 11-like (LOC103859537), transcript variant X4, mRNA	protein indeterminate-domain 11-like(LOC103859537)	coding protein	psRNATarget
XM_009137080.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   =*|=|=|*=||||||||||||||| targets:351   UUUUUUUUUUCUAUUUUUUCUUCU   374 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein indeterminate-domain 11-like (LOC103859537), transcript variant X2, mRNA	protein indeterminate-domain 11-like(LOC103859537)	coding protein	psRNATarget
XM_009137079.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   =*|=|=|*=||||||||||||||| targets:347   UUUUUUUUUUCUAUUUUUUCUUCU   370 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein indeterminate-domain 11-like (LOC103859537), transcript variant X1, mRNA	protein indeterminate-domain 11-like(LOC103859537)	coding protein	psRNATarget
XM_009137081.2	ncRNA:24   GUAGAGAUGAGAUAAAAAAGAAGA   1   =*|=|=|*=||||||||||||||| targets:341   UUUUUUUUUUCUAUUUUUUCUUCU   364 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein indeterminate-domain 11-like (LOC103859537), transcript variant X3, mRNA	protein indeterminate-domain 11-like(LOC103859537)	coding protein	psRNATarget