Search result

BaseInfo

ncRNA ID	novel_bra_miR519
Species	Brassica rapa
Class	miRNA
Genome position	ChrA10:16353222-16353294 [+]
Reference genome	Brapa_1.0
Source	SRR1776877
Length	21
Mature sequence(if miRNA)	53 - CUCGGACCAGGCUUCAUUCCC - 73
Stem-loop(if miRNA)	--  C  UU      CU     -    GA  AAUGAA   GA UG  GUCUGG  CGAGG UCAU  AG      A   || ||  ||||||  ||||| ||||  ||   CU AC  CGGACC  GCUCU AGUA  UC      C CC  U  UU      AG     U    AA  CAAAUC
Stem-loop sequence	GACUGUUGUCUGGCUCGAGGUCAUGAAGAAUGAAACCUAAACCUAAAUGAUUCUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108900.1	ncRNA:21   CCCUUACUUCGGACCAGGCUC   1   *||||||||||||||||||=* targets:948   UGGAAUGAAGCCUGGUCCGGA   968 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009108899.1	ncRNA:21   CCCUUACUUCGGACCAGGCUC   1   *||||||||||||||||||=* targets:949   UGGAAUGAAGCCUGGUCCGGA   969 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009149461.2	ncRNA:21   CCCUUACUUCGGACCAGGCUC   1   *||||||||||||||||||=* targets:1173   UGGAAUGAAGCCUGGUCCGGA   1193 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15 (LOC103871234), mRNA	homeobox-leucine zipper protein ATHB-15(LOC103871234)	coding protein	psRNATarget