ncRNA ID | novel_bra_miR516 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:14496042-14496194 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776796;SRR1776877;SRR1776889;SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 130 - ACUGGAUUUUUAGUUGAGGGUUUU - 153 |
Stem-loop(if miRNA) |
--                  AU                    UAGUUCA                       UAAA   AACCCUCAACUAAAAAUC  GUGAAAUAAACCCUCAACUU       GUUAACAUAUGUUACCCUCCGUC    A   ||||||||||||||||||  ||||||||||||||||||||       |||||||||||||||||||||||    A   UUGGGAGUUGAUUUUUAG  CACUUUAUUUGGGAGUUGAA       CAAUUGUAUACAGUGGGAGGCAG    A UU                  GU                    UAUUUGG                       UGCC |
Stem-loop sequence | AACCCUCAACUAAAAAUCAUGUGAAAUAAACCCUCAACUUUAGUUCAGUUAACAUAUGUUACCCUCCGUCUAAAAAACCGUGACGGAGGGUGACAUAUGUUAACGGUUUAUAAGUUGAGGGUUUAUUUCACUGGAUUUUUAGUUGAGGGUUUU |