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BaseInfo

ncRNA ID novel_bra_miR505
Species Brassica rapa
Class miRNA
Genome position ChrA9:34213152-34213359 [+]
Reference genome Brapa_1.0
Source SRR1776796
Length 24
Mature sequence(if miRNA) 1 - AUUGGAUAUUUUUGGUUCUCGGGU - 24
Stem-loop(if miRNA) --     AUA         C      AA     U   ----CU     A     ----AG        GU    UU   G  UU     -AUU    U       UUUUU
  AUUGG   UUUUUGGUU UCGGGU  AAUUU GGU      UUUAG UAUUU      UUAUUGUG  AUUU  UUU AU  UGAGU    UUCG GUUUUGA     U
  |||||   ||||||||| ||||||  ||||| |||      ||||| |||||      ||||||||  ||||  ||| ||  |||||    |||| |||||||
  UAGCC   AAAAAUCAA AGUCCA  UUAAA UCA      AAGUU AUAGA      AAUGAUAC  UAAA  GAA UA  ACUUA    GAGC CAAGGCU     G
UC     AAG         -      -G     C   AUUAUU     C     CAUUUA        AU    CC   G  UU     GGUC    -       UUUCG
Stem-loop sequence AUUGGAUAUUUUUGGUUCUCGGGUAAAAUUUUGGUCUUUUAGAUAUUUAGUUAUUGUGGUAUUUUUUUUGAUUUUGAGUAUUUUCGUGUUUUGAUUUUUUGGCUUUUCGGAACCGAGCUGGAUUCAUUAUGAAGCCAAAUUACAUAGUAAAUUUACAGAUACUUGAAUUAUUAACUCAAAUUGACCUGAAACUAAAAAGAACCGAUCU