ncRNA ID | novel_bra_miR487 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA8:21191300-21191476 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776796;SRR1776899 |
Length | 24 |
Mature sequence(if miRNA) | 154 - AGUAGAAUUUUUAUAGAGUUGGUU - 177 |
Stem-loop(if miRNA) |
--A             -     ------------AUGUA    -        G  ---AAG          - U   UU   GUUU    --UU     AA    UAACUCUAUAAAG UUCUA                 UGAA AAACAUGU AU      CGGUGUAUAU C GCG  CUG    CCAU    GUAUU  A    ||||||||||||| |||||                 |||| |||||||| ||      |||||||||| | |||  |||    ||||    |||||    GUUGAGAUAUUUU AAGAU                 AUUU UUUGUAUA UA      GUCACGUAUA G UGU  GAU    GGUA    CAUGA  C UUG             U     GAGGGUGAUUGGGGGGG    C        G  AGUUUA          A U   -U   ----    UUAU     AU |
Stem-loop sequence | AUAACUCUAUAAAGUUCUAAUGUAUGAAAAACAUGUGAUAAGCGGUGUAUAUCUGCGUUCUGGUUUCCAUUUGUAUUAAACUAAGUACUAUUAUGGUAGUUGUUGAAUAUGCACUGAUUUGAAUGAUAUGUUUCUUUAGGGGGGGUUAGUGGGAGUAGAAUUUUUAUAGAGUUGGUU |