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BaseInfo

ncRNA ID novel_bra_miR483
Species Brassica rapa
Class miRNA
Genome position ChrA7:1497891-1497943 [-]
Reference genome Brapa_1.0
Source SRR1776796
Length 23
Mature sequence(if miRNA) 1 - CGGAACACUUCUCGGAAGACUUA - 23
Stem-loop(if miRNA) --        -     AC        U
  AGUCUUCC AGAAG  UUCUGGGA G
  |||||||| |||||  ||||||||
  UCAGAAGG UCUUC  AAGGCCUU U
AU        C     AC        C
Stem-loop sequence AGUCUUCCAGAAGACUUCUGGGAUGUCUUCCGGAACACUUCUCGGAAGACUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018653387.1
ncRNA:23   AUUCAGAAGGCUCUUCACAAGGC   1
  ||*|||||=||||||||*|||||
targets:683   UAUGUCUUUCGAGAAGUCUUCCG   705

2.5 PREDICTED: Brassica rapa cytochrome P450 81F1-like (LOC103833873), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009152198.2
ncRNA:23   AUUCAGAAGGCUCUUCACAAGGC   1
  |***|=*|||||||||||||||*
targets:327   UUCAUUAUCCGAGAAGUGUUCCA   349

3.0 PREDICTED: Brassica rapa beta-galactosidase 10 (LOC103873800), mRNA beta-galactosidase 10(LOC103873800) coding protein psRNATarget