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BaseInfo

ncRNA ID	novel_bra_miR476
Species	Brassica rapa
Class	miRNA
Genome position	ChrA8:16561852-16562017 [+]
Reference genome	Brapa_1.0
Source	SRR1125021;SRR2912894
Length	23
Mature sequence(if miRNA)	1 - GAAGAUGAUGAGAUAUAGCAGGU - 23
Stem-loop(if miRNA)	--         GA   A   C   UA     GA   GUCUGUUUUAUCCUUUUGGAAUGUUUAUUCUUGGUGCAACAGUGUUU   GAAGAUGAU  GAU UAG AGG  CUUAA  UCA                                               A   |||||||||  ||| ||| |||  |||||  |||                                               A   CUUCUACUA  UUA GUC UCU  GAAUU  ACU                                               C AU         AC   -   U   UC     AA   UUUCAGUAAGUUCGACUCAAUAGGCCUUCUAUAAGCCGUGUCGUUCU
Stem-loop sequence	GAAGAUGAUGAGAUAUAGCAGGUACUUAAGAUCAGUCUGUUUUAUCCUUUUGGAAUGUUUAUUCUUGGUGCAACAGUGUUUAACUCUUGCUGUGCCGAAUAUCUUCCGGAUAACUCAGCUUGAAUGACUUUUCAAAUUAAGCUUCUUCUGAUUCAAUCAUCUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009103710.2	ncRNA:23   UGGACGAUAUAGAGUAGUAGAAG   1   *|||*||*|*||||||||||||| targets:59   UCCUCCUCUCUCUCAUCAUCUUC   81 Target Full Sequence	3.0	PREDICTED: Brassica rapa alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (LOC103828113), transcript variant X2, mRNA	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase(LOC103828113)	coding protein	psRNATarget
XM_009103709.2	ncRNA:23   UGGACGAUAUAGAGUAGUAGAAG   1   *|||*||*|*||||||||||||| targets:51   UCCUCCUCUCUCUCAUCAUCUUC   73 Target Full Sequence	3.0	PREDICTED: Brassica rapa alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (LOC103828113), transcript variant X1, mRNA	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase(LOC103828113)	coding protein	psRNATarget