ncRNA ID | novel_bra_miR474 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA6:20409121-20409234 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1776796 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UAUGUAGCGACCGAGCGGGACGAU - 24 |
Stem-loop(if miRNA) |
--               C    -C  U        C               A   CGA   UAUGUAGCGACCGAG GGGA  GA CGCUCGGU GCUACGUAGCGACCG GCU   G   ||||||||||||||| ||||  || |||||||| ||||||||||||||| |||   AUGUAUCGCUGGCUC CCCU  CU GCGAGCCA CGAUGCAUCGUUGGC CGA   C CG               A    AA  -        A               C   AAC |
Stem-loop sequence | UAUGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCUCGAGCCAAAGCCCGGUUGCUACGUAGCAACCGAGCGUCAAUCCCACUCGGUCGCUAUGUAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009126102.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103849316 (LOC103849316), mRNA | uncharacterized LOC103849316(LOC103849316) | coding protein | psRNATarget |