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BaseInfo

ncRNA ID novel_bra_miR474
Species Brassica rapa
Class miRNA
Genome position ChrA6:20409121-20409234 [+]
Reference genome Brapa_1.0
Source SRR1776796
Length 24
Mature sequence(if miRNA) 1 - UAUGUAGCGACCGAGCGGGACGAU - 24
Stem-loop(if miRNA) --               C    -C  U        C               A   CGA
  UAUGUAGCGACCGAG GGGA  GA CGCUCGGU GCUACGUAGCGACCG GCU   G
  ||||||||||||||| ||||  || |||||||| ||||||||||||||| |||
  AUGUAUCGCUGGCUC CCCU  CU GCGAGCCA CGAUGCAUCGUUGGC CGA   C
CG               A    AA  -        A               C   AAC
Stem-loop sequence UAUGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCUCGAGCCAAAGCCCGGUUGCUACGUAGCAACCGAGCGUCAAUCCCACUCGGUCGCUAUGUAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009126102.1
ncRNA:24   UAGCAGGGCGAGCCAGCGAUGUAU   1
  =|||||||||||||||||||=||=
targets:537   GUCGUCCCGCUCGGUCGCUAUAUG   560

2.5 PREDICTED: Brassica rapa uncharacterized LOC103849316 (LOC103849316), mRNA uncharacterized LOC103849316(LOC103849316) coding protein psRNATarget