Search result

BaseInfo

ncRNA ID	novel_bra_miR473
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:20408770-20408987 [+]
Reference genome	Brapa_1.0
Source	SRR1776796
Length	24
Mature sequence(if miRNA)	1 - UAUGUAGCGACCGAGCGGGACGAU - 24
Stem-loop(if miRNA)	--                                                    -AU  UCC                            -AU  UCC            A   UAUGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCG   CG   CGCUCGGUCGCUACGUAGCGACCGAGCG   CG   CGCUCGGUCGCU C   ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||   ||||||||||||||||||||||||||||   ||   ||||||||||||   AUGCAUCGCUGGCUCGCCCUGCUAGCGAGCCAGCGAUGCAUCGCUGGCUCGC   GC   GCGAGCCAGCGAUGCAUCGCUGGCUCGC   GC   GCGAGCCAGCGA G CG                                                    CCU  -UA                            CCU  -UA            U
Stem-loop sequence	UAUGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGCGACCGAGCGAUCGUCCCGCUCGGUCGCUACGUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009126102.1	ncRNA:24   UAGCAGGGCGAGCCAGCGAUGUAU   1   =|||||||||||||||||||=||= targets:537   GUCGUCCCGCUCGGUCGCUAUAUG   560 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103849316 (LOC103849316), mRNA	uncharacterized LOC103849316(LOC103849316)	coding protein	psRNATarget