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BaseInfo

ncRNA ID novel_bra_miR463
Species Brassica rapa
Class miRNA
Genome position ChrA4:7971884-7971941 [-]
Reference genome Brapa_1.0
Source SRR1776796
Length 24
Mature sequence(if miRNA) 35 - UCGGAUUACUUUGAAUAUUUCGGA - 58
Stem-loop(if miRNA) --      U    UG  UAU        A
  UCGGAU ACUU  AA   UUCGGAUA A
  |||||| ||||  ||   ||||||||
  GGCUUG UGGA  UU   AGGUCUAU A
UA      U    GU  CAU        C
Stem-loop sequence UCGGAUUACUUUGAAUAUUUCGGAUAAAACUAUCUGGAUACUUUGAGGUUGUUCGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009138766.2
ncRNA:24   AGGC----UUUAUAAGUUUCAUUAGGCU   1
  ||=|----=||||*|||||||||||*||
targets:2411   UCUGUUACGAAUAAUCAAAGUAAUCAGA   2438

2.5 PREDICTED: Brassica rapa vacuolar protein sorting-associated protein 54, chloroplastic-like (LOC103861057), mRNA vacuolar protein sorting-associated protein 54, chloroplastic-like(LOC103861057) coding protein psRNATarget