ncRNA ID | novel_bra_miR453 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:19389318-19389543 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1776796 |
Length | 23 |
Mature sequence(if miRNA) | 204 - GCGGGACGAUCGCUCGGUCGCUU - 226 |
Stem-loop(if miRNA) |
--    GA  -A             U                 GA  -A                              GA  -A                              G   GCGG  CG  UCGCUCGGUCGCU ACGUGGCGACCGAGCGG  CG  UCGCUCGGUCGCUACGUAGCGACCGAGCGG  CG  UCGCUCGGUCGCUACGUAGCGACCGAGCGG A   ||||  ||  ||||||||||||| |||||||||||||||||  ||  ||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||| C   CGCU  GC  GGCGAGCCAGCGA UGCAUCGCUGGCUCGCU  GC  GGCGAGCCAGCGAUGCAUCGCUGGCUCGCU  GC  GGCGAGCCAGCGAUGCAUCGCUGGCUCGCU G CU    -A  AG             -                 -A  AG                              -A  AG                              A |
Stem-loop sequence | GCGGGACGAUCGCUCGGUCGCUUACGUGGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGGGACGAUCGCUCGGUCGCUACGUAGCGACCGAGCGGGACGAUCGCUC |