ncRNA ID | novel_bra_miR447 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:16916562-16916776 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592478;SRR1776889 |
Length | 24 |
Mature sequence(if miRNA) | 192 - AACCCUCAACUAAAGAUAGAUCGU - 215 |
Stem-loop(if miRNA) |
-   -              AG          CU    U         AA      -  A    -A      AAC        CAC   CG         AUA     CGA  AAC CCUCAACUAAAGAU  AUCGUAAAAA  CCCC UCAACUAAA  AUUCGG GA AGAA  CCUUAA   UUUAGUUC   UGA  UUUGUCACC   UGUCA   U  ||| ||||||||||||||  ||||||||||  |||| |||||||||  |||||| || ||||  ||||||   ||||||||   |||  |||||||||   |||||   A  UUG GGAGUUGAUUUCUA  UAGCGUUUUU  GGGG AGUUGAUUU  UAAGCU CU UCUU  GGAGUU   AAAUUAAG   AUU  AAACAGUGG   GCAGU   U U   A              CA          -U    U         -G      G  A    CG      --A        AUA   AU         GAG     UUU |
Stem-loop sequence | AACCCUCAACUAAAGAUAGAUCGUAAAAACUCCCCUUCAACUAAAAAAUUCGGGAAAGAAACCUUAAAACUUUAGUUCCACUGACGUUUGUCACCAUAUGUCACGAUAUUUUUGACGGAGGGUGACAAAUAUUAAUAGAAUUAAAAUUGAGGGCUUCUAUCGUCGAAUGUUUAGUUGAUGGGGUUUUUUGCGAUACAUCUUUAGUUGAGGAGUUU |