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BaseInfo

ncRNA ID novel_bra_miR446
Species Brassica rapa
Class miRNA
Genome position ChrA1:20178600-20178655 [-]
Reference genome Brapa_1.0
Source SRR1592478
Length 24
Mature sequence(if miRNA) 1 - AGAGGAAAAAAUGGAGUAGGGAUG - 24
Stem-loop(if miRNA) --            A  CA      CUC
  UCCUUACUUCAU UU  CUUUUA   C
  |||||||||||| ||  ||||||
  AGGGAUGAGGUA AA  GGAGAU   A
GU            A  AA      UUU
Stem-loop sequence UCCUUACUUCAUAUUCACUUUUACUCCAUUUUAGAGGAAAAAAUGGAGUAGGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009133654.2
ncRNA:24   GUAGGGAUGAGGUAAAAAAGGAGA   1
  |||==||*|||||||||*||||||
targets:24   CAUUUCUUCUCCAUUUUAUCCUCU   47

2.5 PREDICTED: Brassica rapa serine carboxypeptidase-like 47 (LOC103856543), mRNA serine carboxypeptidase-like 47(LOC103856543) coding protein psRNATarget