Search result

BaseInfo

ncRNA ID novel_bra_miR436
Species Brassica rapa
Class miRNA
Genome position ChrA9:1734748-1734808 [+]
Reference genome Brapa_1.0
Source SRR1592478
Length 24
Mature sequence(if miRNA) 1 - AAGAGACGGCUCUUAACUUUUCUU - 24
Stem-loop(if miRNA) --      -  G  C    C        UUU
  AAGAGA CG CU UUAA UUUUCUUA   A
  |||||| || || |||| ||||||||   A
  UUCUCU GC GA AAUU AAAAGAAU   U
AA      A  A  -    A        CUA
Stem-loop sequence AAGAGACGGCUCUUAACUUUUCUUAUUUAAUAUCUAAGAAAAAUUAAAGACGAUCUCUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009151904.2
ncRNA:24   UUCUUUUCAAUUCUCGGCAGAGAA   1
  ||-|||||*||||||*||||||||
targets:1251   AA-AAAAGCUAAGAGACGUCUCUU   1273

2.5 PREDICTED: Brassica rapa UPF0160 protein (LOC103873492), mRNA UPF0160 protein(LOC103873492) coding protein psRNATarget