ncRNA ID | novel_bra_miR436 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:1734748-1734808 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592478 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGAGACGGCUCUUAACUUUUCUU - 24 |
Stem-loop(if miRNA) |
--      -  G  C    C        UUU   AAGAGA CG CU UUAA UUUUCUUA   A   |||||| || || |||| ||||||||   A   UUCUCU GC GA AAUU AAAAGAAU   U AA      A  A  -    A        CUA |
Stem-loop sequence | AAGAGACGGCUCUUAACUUUUCUUAUUUAAUAUCUAAGAAAAAUUAAAGACGAUCUCUUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009151904.2 |
|
2.5 | PREDICTED: Brassica rapa UPF0160 protein (LOC103873492), mRNA | UPF0160 protein(LOC103873492) | coding protein | psRNATarget |