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BaseInfo

ncRNA ID	ath-miR5014a-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:24553909-24554049 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	103 - UUGUACAAAUUUAAGUGUACG - 123
Stem-loop(if miRNA)	CUA                  U                        A  AAA   A     A AUUUUUUA   UUUGAUUCGUACACUUAG UUUGUACAACAUUUUUAGUGUACA AU   UAA UGUAC C ||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||   ||| ||||| A UGAAAAGU   AAACUAAGCAUGUGAAUU AAACAUGUUGUGAAAAUCACAUGU UA   AUU ACAUG G         AUC                  U                        C  --C   C     C
Stem-loop sequence	AUUUUUUACUAUUUGAUUCGUACACUUAGUUUUGUACAACAUUUUUAGUGUACAAAUAAAUAAAUGUACACAGCGUACACUUACAUCUGUACACUAAAAGUGUUGUACAAAUUUAAGUGUACGAAUCAAACUAUGAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX814107.1	ncRNA:21   GCAUGUGAAUUUAAACAUGUU   1   **||||*|||||||||||||* targets:1066   AAUACAGUUAAAUUUGUACAU   1086 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_179830.1	ncRNA:21   GCAUGUGAAUUUAAACAUGUU   1   ||||||||||=|||||||||* targets:361   CGUACACUUAGAUUUGUACAC   381 Target Full Sequence	2.5	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein partial mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT2G31215)	coding protein	psRNATarget

Reference

1	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).
2	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).