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BaseInfo

ncRNA ID novel_bra_miR421
Species Brassica rapa
Class miRNA
Genome position ChrA5:1046649-1046835 [-]
Reference genome Brapa_1.0
Source SRR1592478
Length 24
Mature sequence(if miRNA) 1 - AAUCGUGGACUGUCACGUGUCAGU - 24
Stem-loop(if miRNA) --CA        UG   UG        --  A     -     UUUUUUUUAUU UG C        --U       AC UU   UCAUUA   A     
    AUACGUGG  GUC  CGAUUGGU  GU UUUUU UAAUU           C  A AAAAAAAA   UUAAGCA  U  CAA      AUG UGCUCU
    ||||||||  |||  ||||||||  || ||||| |||||           |  | ||||||||   |||||||  |  |||      ||| |||||U
    UGUGCACU  CAG  GCUAACCA  CA AAAAA AUUAA           G  U UUUUUUUU   AAUUUGU  G  GUU      UAC ACGAGA
UGAC        GU   GU        AG  A     U     -UCUCUUUUUU GU U        UUU       -- GG   ------   C     
Stem-loop sequence CAAUACGUGGUGGUCUGCGAUUGGUGUAUUUUUUAAUUUUUUUUUUAUUCUGACAAAAAAAAUUUAAGCAACUUUCAAUCAUUAAUGAUGCUCUUAGAGCACCAUUUGGGGUGUUUAAUUUUUUUUUUUUUUGGUUUUUUCUCUAAUUAUAAAAAAACGAACCAAUCGUGGACUGUCACGUGUCAGU