Search result

BaseInfo

ncRNA ID	novel_bra_miR409
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:11551837-11551899 [-]
Reference genome	Brapa_1.0
Source	SRR1592478;SRR1776877
Length	24
Mature sequence(if miRNA)	40 - AAGCUAGAUGAACUUCCAACCUAA - 63
Stem-loop(if miRNA)	--   C     GAACUU    -  UAAA    A   AAG UAGAU      CCAA CC    ACAA U   ||| |||||      |||| ||    |||| U   UUC AUCUA      GGUU GG    UGUU U UA   U     ---AUU    A  UGAA    A
Stem-loop sequence	AAGCUAGAUGAACUUCCAACCUAAAACAAAUUUAUUGUAAGUGGAUUGGUUAAUCUAUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009113224.2	ncRNA:24   AAUC---------CAACCUUCAAGUAGAUCGAA   1   ||=|---------|||||||||||=|||||||* targets:466   UUGGAAUCAAAUCGUUGGAAGUUCGUCUAGCUG   498 Target Full Sequence	2.5	PREDICTED: Brassica rapa bifunctional protein FolD 4, chloroplastic (LOC103836908), mRNA	bifunctional protein FolD 4, chloroplastic(LOC103836908)	coding protein	psRNATarget
XM_009139775.2	ncRNA:24   AA-U-CCAACCUUCAAGUAGAUCGAA   1   ||-|-||*||||||||||||||*||| targets:1533   UUCAUGGAUGGAAGUUCAUCUAUCUU   1558 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable xyloglucan glycosyltransferase 5 (LOC103862068), mRNA	probable xyloglucan glycosyltransferase 5(LOC103862068)	coding protein	psRNATarget