Search result

BaseInfo

ncRNA ID	novel_bra_miR408
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:11562446-11562520 [-]
Reference genome	Brapa_1.0
Source	SRR1592477
Length	21
Mature sequence(if miRNA)	1 - CUGAAGUGUUUGGGGGAACUC - 21
Stem-loop(if miRNA)	--                  U     AAAAAU     GC   GUUCCUCUAAGCACUUCA UGGAG      CAUUU  U   |||||||||||||||||| |||||      |||||  A   CAAGGGGGUUUGUGAAGU ACCUU      GUAAA  U CU                  C     ----AU     AG
Stem-loop sequence	GUUCCUCUAAGCACUUCAUUGGAGAAAAAUCAUUUGCUAUGAAAAUGUAUUCCACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009103518.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||||||=||||||||||||* targets:399   GAGUUCCUCCAAACACUUCAU   419 Target Full Sequence	2.0	PREDICTED: Brassica rapa ATP sulfurylase 4, chloroplastic (LOC103827954), mRNA	ATP sulfurylase 4, chloroplastic(LOC103827954)	coding protein	psRNATarget
XM_009142693.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1096   GAGUGCCUCCAAACACUUCAG   1116 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103864919 (LOC103864919), mRNA	uncharacterized LOC103864919(LOC103864919)	coding protein	psRNATarget
XM_009123832.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X2, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget
XM_009127072.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:124   AAGUUCUCCCAAACACUUCAA   144 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1 (LOC103850335), mRNA	sulfate transporter 2.1(LOC103850335)	coding protein	psRNATarget
XM_009123831.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X1, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget