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BaseInfo

ncRNA ID novel_bra_miR406
Species Brassica rapa
Class miRNA
Genome position ChrA9:3447526-3447612 [-]
Reference genome Brapa_1.0
Source SRR1161445
Length 21
Mature sequence(if miRNA) 67 - UCUCGUUCUCUCGUUUCAGCU - 87
Stem-loop(if miRNA) --    G   U  C         AA    -UAUU      -   G
  UCUC UUC CU GUUUCAGCU  UGUG     GUUUCA UCA U
  |||| ||| || |||||||||  ||||     |||||| ||| U
  AGAG AAG GA CGAAGUCGA  ACAU     CAAAGU GGU A
AG    A   U  U         --    UUGUU      U   A
Stem-loop sequence UCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAACUUGUUUACAAGCUGAAGCUAGUGAAAGAGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009152717.2
ncRNA:21   UCG-ACUUUGCUCUCUUGCUCU   1
  |||-|||||||||||||||||=
targets:1409   AGCCUGAAACGAGAGAACGAGG   1430

3.0 PREDICTED: Brassica rapa metal-nicotianamine transporter YSL2 (LOC103874307), mRNA metal-nicotianamine transporter YSL2(LOC103874307) coding protein psRNATarget