ncRNA ID | novel_bra_miR406 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:3447526-3447612 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1161445 |
Length | 21 |
Mature sequence(if miRNA) | 67 - UCUCGUUCUCUCGUUUCAGCU - 87 |
Stem-loop(if miRNA) |
--    G   U  C         AA    -UAUU      -   G   UCUC UUC CU GUUUCAGCU  UGUG     GUUUCA UCA U   |||| ||| || |||||||||  ||||     |||||| ||| U   AGAG AAG GA CGAAGUCGA  ACAU     CAAAGU GGU A AG    A   U  U         --    UUGUU      U   A |
Stem-loop sequence | UCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAACUUGUUUACAAGCUGAAGCUAGUGAAAGAGAGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009152717.2 |
|
3.0 | PREDICTED: Brassica rapa metal-nicotianamine transporter YSL2 (LOC103874307), mRNA | metal-nicotianamine transporter YSL2(LOC103874307) | coding protein | psRNATarget |