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BaseInfo

ncRNA ID	novel_bra_miR401
Species	Brassica rapa
Class	miRNA
Genome position	ChrA1:12316293-12316446 [-]
Reference genome	Brapa_1.0
Source	SRR1592477
Length	24
Mature sequence(if miRNA)	1 - AGUAAAUUAUGGAGUGGAGAUGAA - 24
Stem-loop(if miRNA)	--                      CCA    UA    -AAAAA  A    -    U      U   -AA         U   UAUCUCCACUCUAUAAUUUAUU   AAAA  GAGU      UG AAUA UAAA AAAUAA AAA   AUUAUUUAA U   ||||||||||||||||||||||   ||||  ||||      || |||| |||| |||||| |||   |||||||||   GUAGAGGUGAGGUAUUAAAUGA   UUUU  CUCA      AC UUAU AUUU UUUGUU UUU   UAAUGAGUU U AA                      -CA    CC    CUCUUG  A    U    U      U   CAC         A
Stem-loop sequence	UAUCUCCACUCUAUAAUUUAUUCCAAAAAUAGAGUAAAAAUGAAAUAUAAAUAAAUAAUAAAAAAUUAUUUAAUUUAUUGAGUAAUCACUUUUUUGUUUUUUUAUUAUUACAGUUCUCACUCCCUUUUACAGUAAAUUAUGGAGUGGAGAUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009137393.2	ncRNA:24   AAGUAGAGGUGAGGUAUUAAAUGA   1   |*|||=|||||||||||||||||| targets:1099   UCCAUUUCCACUCCAUAAUUUACU   1122 Target Full Sequence	1.0	PREDICTED: Brassica rapa zinc finger protein AZF2-like (LOC103859816), mRNA	zinc finger protein AZF2-like(LOC103859816)	coding protein	psRNATarget
XM_018655293.1	ncRNA:24   AAGUAGAGGUGAGGUAUUAAAUGA   1   |*||||*=|||||||||||||||| targets:1959   UCCAUCCUCACUCCAUAAUUUACU   1982 Target Full Sequence	2.0	PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA	NA	coding protein	psRNATarget