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BaseInfo

ncRNA ID novel_bra_miR397
Species Brassica rapa
Class miRNA
Genome position ChrA9:33697050-33697110 [-]
Reference genome Brapa_1.0
Source SRR1592477
Length 24
Mature sequence(if miRNA) 38 - AAAAAAGCUAAGAACCGGUUUUUA - 61
Stem-loop(if miRNA) --              C            C
  AAAAAAGCUAAGAA CGGUUUUUAAGU U
  |||||||||||||| |||||||||||| C
  UUUUUUUGAUUUUU GUCAAAAAUUUA U
UU              A            U
Stem-loop sequence AAAAAAGCUAAGAACCGGUUUUUAAGUCUCUUAUUUAAAAACUGAUUUUUAGUUUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009131757.2
ncRNA:24   AUUUUUGGCCAAGAAUCGAAAAAA   1
  |||=||||||||=|||||||||||
targets:518   UAAGAACCGGUUUUUAGCUUUUUU   541

1.5 PREDICTED: Brassica rapa uncharacterized LOC103854791 (LOC103854791), mRNA uncharacterized LOC103854791(LOC103854791) coding protein psRNATarget