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BaseInfo

ncRNA ID novel_bra_miR389
Species Brassica rapa
Class miRNA
Genome position ChrA8:13509395-13509477 [-]
Reference genome Brapa_1.0
Source SRR1592477;SRR1776880;SRR1485259;SRR1485260;SRR1160826
Length 21
Mature sequence(if miRNA) 63 - UGACAGAAGAGAGUGAGCACU - 83
Stem-loop(if miRNA) --        -     -       U    AG   CU     GU
  UGACAGAA GAGAG UGAGCAC UGCA  GCA  GUUAU  G
  |||||||| ||||| ||||||| ||||  |||  |||||
  ACUGUCUU CUCUC ACUCGUG GUGU  CGU  CAAUA  U
UG        U     C       C    -G   UU     AC
Stem-loop sequence UGACAGAAGAGAGUGAGCACUUGCAAGGCACUGUUAUGUGUCAAUAACUUUGCGUGUGCGUGCUCACCUCUCUUUCUGUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009104735.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1931   AGUGCUCUCUCUCUUCUGUCA   1951

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X1, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_009104737.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1925   AGUGCUCUCUCUCUUCUGUCA   1945

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X3, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_018653833.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1769   AGUGCUCUCUCUCUUCUGUCA   1789

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009104736.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1242   AGUGCUCUCUCUCUUCUGUCA   1262

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103829068) coding protein psRNATarget
XM_018655172.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1234   AGUGCUCUCUCUCUUCUGUCA   1254

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009115520.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1229   AGUGCUCUCUCUCUUCUGUCA   1249

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103839042) coding protein psRNATarget
XM_009111566.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1229   AGUGCUCUCUCUCUUCUGUCA   1249

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X2, mRNA squamosa promoter-binding-like protein 10(LOC103835406) coding protein psRNATarget
XM_009111568.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1224   AGUGCUCUCUCUCUUCUGUCA   1244

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X3, mRNA squamosa promoter-binding-like protein 10(LOC103835406) coding protein psRNATarget
XM_018659841.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1556   GGUGCUCUCUCUCUUCUGUCA   1576

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009103544.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1211   GGUGCUCUCUCUCUUCUGUCA   1231

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC103827978) coding protein psRNATarget
XM_009103545.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1172   GGUGCUCUCUCUCUUCUGUCA   1192

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X3, mRNA squamosa promoter-binding-like protein 2(LOC103827978) coding protein psRNATarget
XM_009115758.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1235   GGUGCUCUCUCUCUUCUGUCA   1255

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC103839253) coding protein psRNATarget
XM_018654907.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1234   GGUGCUCUCUCUCUUCUGUCA   1254

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018659842.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1129   GGUGCUCUCUCUCUUCUGUCA   1149

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X4, mRNA NA coding protein psRNATarget
XM_009115759.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  =||||||*|||||||||||||
targets:1120   GGUGCUCUCUCUCUUCUGUCA   1140

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC103839253) coding protein psRNATarget
XM_018653131.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1738   CGUGCUCUCUCUCUUCUGUCA   1758

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X2, mRNA NA coding protein psRNATarget
XM_009144564.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1153   UGUGCUCUCUCUCUUCUGUCA   1173

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103866616), mRNA squamosa promoter-binding-like protein 9(LOC103866616) coding protein psRNATarget
XM_009143798.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1076   UGUGCUCUCUCUCUUCUGUCA   1096

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103865930), mRNA squamosa promoter-binding-like protein 9(LOC103865930) coding protein psRNATarget
XM_009104738.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1299   CGUGCUCUCUCUCUUCUGUCA   1319

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X1, mRNA squamosa promoter-binding-like protein 11(LOC103829069) coding protein psRNATarget
XM_009129458.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:965   UGUGCUCUCUCUCUUCUGUCA   985

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103852554), mRNA squamosa promoter-binding-like protein 6(LOC103852554) coding protein psRNATarget
XM_009105834.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:744   UGUGCUCUCUCUCUUCUGUCA   764

1.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103830125), mRNA squamosa promoter-binding-like protein 15(LOC103830125) coding protein psRNATarget
XM_009107215.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||==|||||||||||||
targets:823   UGUGCUUGCUCUCUUCUGUCA   843

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC103831318) coding protein psRNATarget
XM_009107214.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||==|||||||||||||
targets:816   UGUGCUUGCUCUCUUCUGUCA   836

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103831318), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC103831318) coding protein psRNATarget
XM_009143099.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  **||||==|||||||||||||
targets:605   UUUGCUUGCUCUCUUCUGUCA   625

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103865301), mRNA squamosa promoter-binding-like protein 3(LOC103865301) coding protein psRNATarget
XM_009134706.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  **||||==|||||||||||||
targets:549   UUUGCUUGCUCUCUUCUGUCA   569

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 3 (LOC103857508), mRNA squamosa promoter-binding-like protein 3(LOC103857508) coding protein psRNATarget
XM_009115522.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||=*|||||||||||||
targets:1296   CGUGCUUUCUCUCUUCUGUCA   1316

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X1, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115524.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||=*|||||||||||||
targets:1233   CGUGCUUUCUCUCUUCUGUCA   1253

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X3, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115523.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||=*|||||||||||||
targets:1225   CGUGCUUUCUCUCUUCUGUCA   1245

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X2, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009115526.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||||=*|||||||||||||
targets:1205   CGUGCUUUCUCUCUUCUGUCA   1225

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X4, mRNA squamosa promoter-binding-like protein 11(LOC103839045) coding protein psRNATarget
XM_009140754.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||=||*|||||||||||||
targets:792   UGUGUUCUCUCUCUUCUGUCA   812

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA squamosa promoter-binding-like protein 15(LOC103863019) coding protein psRNATarget
XM_009140755.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|||=||*|||||||||||||
targets:765   UGUGUUCUCUCUCUUCUGUCA   785

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA squamosa promoter-binding-like protein 15(LOC103863019) coding protein psRNATarget
XM_009134452.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|*||||*|||||||||||||
targets:1152   UGCGCUCUCUCUCUUCUGUCA   1172

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X3, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009134450.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|*||||*|||||||||||||
targets:1059   UGCGCUCUCUCUCUUCUGUCA   1079

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009134451.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *|*||||*|||||||||||||
targets:1043   UGCGCUCUCUCUCUUCUGUCA   1063

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC103857275) coding protein psRNATarget
XM_009148024.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |**||||*|||||||||||||
targets:1074   ACCGCUCUCUCUCUUCUGUCA   1094

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103869942), mRNA squamosa promoter-binding-like protein 5(LOC103869942) coding protein psRNATarget
XM_009117412.2
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  ***||||*|||||||||||||
targets:634   CCAGCUCUCUCUCUUCUGUCA   654

2.0 PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103840895), mRNA squamosa promoter-binding-like protein 5(LOC103840895) coding protein psRNATarget
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