A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	ath-miRf10750-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UAAGUAUGGCAGGAUUAAGA - NA
Stem-loop(if miRNA)	U -A U GAU A GCU GUA GAUG GUAAGUA GGCAG UAAGA CUUGC UG A \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\| CUAC UAUUCAU UCGUU GUUUU GAAUG AC G A AG C AAC A GUU ACA
Stem-loop sequence	UGAUGAGUAAGUAUGGCAGGAUUAAGAACUUGCGCUUGGUAAGACACAUUGGUAAGAUUUUGCAAUUGCUCUACUUAUGACAUCA

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

NM_103489.3

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:649	UCUUAGUCCUGCCAUACUUG	668

2.0

Arabidopsis thaliana tubby like protein 5 (TLP5), mRNA

tubby like protein 5(TLP5)

coding protein

psRNATarget

NM_001333218.1

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:555	UCUUAGUCCUGCCAUACUUG	574

2.0

Arabidopsis thaliana tubby like protein 5 (TLP5), mRNA

tubby like protein 5(TLP5)

coding protein

psRNATarget

AY072154.1

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:551	UCUUAGUCCUGCCAUACUUG	570

2.0

Arabidopsis thaliana unknown protein (At1g43640) mRNA, complete cds

coding protein

psRNATarget

AF424565.1

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:551	UCUUAGUCCUGCCAUACUUG	570

2.0

Arabidopsis thaliana At1g43640/T10P12_16 mRNA, complete cds

coding protein

psRNATarget

AY122972.1

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:432	UCUUAGUCCUGCCAUACUUG	451

2.0

Arabidopsis thaliana unknown protein (At1g43640) mRNA, complete cds

coding protein

psRNATarget

AY046921.1

ncRNA:20	AGAAUUAGGACGGUAUGAAU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:432	UCUUAGUCCUGCCAUACUUG	451

2.0

Arabidopsis thaliana tubby-like protein 5 mRNA, complete cds

coding protein

psRNATarget