ncRNA ID | novel_bra_miR382 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:5774345-5774448 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592477;SRR1592478 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AAUGGAGUGGGAAAUGGAGUA - 21 |
Stem-loop(if miRNA) |
--            A       A                  G       CAU   AAUGGAGUGGGA AUGGAGU AUGAACAAAAAAUAAAAG AUUACUC   U   |||||||||||| ||||||| |||||||||||||||||| |||||||   UUACCUCACCCU UACCUCA UACUUGUUUUUUAUUUUC UAAUGAG   U UU            C       C                  G       AUA |
Stem-loop sequence | AAUGGAGUGGGAAAUGGAGUAAUGAACAAAAAAUAAAAGGAUUACUCCAUUUAUAGAGUAAUGCUUUUAUUUUUUGUUCAUCACUCCAUCUCCCACUCCAUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009123752.2 |
|
3.0 | PREDICTED: Brassica rapa trafficking protein particle complex II-specific subunit 120 homolog (LOC103846756), mRNA | trafficking protein particle complex II-specific subunit 120 homolog(LOC103846756) | coding protein | psRNATarget |