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BaseInfo

ncRNA ID novel_bra_miR380
Species Brassica rapa
Class miRNA
Genome position ChrA1:11337367-11337536 [+]
Reference genome Brapa_1.0
Source SRR1592477
Length 24
Mature sequence(if miRNA) 147 - GUGCGGGACAAACGGUUUAACUGC - 170
Stem-loop(if miRNA) ---A       -        U    -        --CUC   U     ---CUG          UUU    -UUUAUU     UU  UUG
    UUAAGCU UUUGUCUC CACC UUCAAGCU     GAU UCUCU      UUUCAGAUUU   UUUA       UUAUU  AU   G
    ||||||| |||||||| |||| ||||||||     ||| |||||      ||||||||||   ||||       |||||  ||
    AAUUUGG AAACAGGG GUGG AAGUUUGA     UUG AGAGG      AAAGUCUAAA   AGAU       AAUAA  UG   U
CGUC       C        C    U        CAUAU   U     UAUAUA          UUU    UUUUUUU     -U  UCU
Stem-loop sequence AUUAAGCUUUUGUCUCUCACCUUCAAGCUCUCGAUUUCUCUCUGUUUCAGAUUUUUUUUUAUUUAUUUUAUUUUAUUUGGUUCUGUUAAUAAUUUUUUUUAGAUUUAAAUCUGAAAAUAUAUGGAGAUGUUUAUACAGUUUGAAUGGUGCGGGACAAACGGUUUAACUGC