ncRNA ID | novel_bra_miR380 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA1:11337367-11337536 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592477 |
Length | 24 |
Mature sequence(if miRNA) | 147 - GUGCGGGACAAACGGUUUAACUGC - 170 |
Stem-loop(if miRNA) |
---A       -        U    -        --CUC   U     ---CUG          UUU    -UUUAUU     UU  UUG     UUAAGCU UUUGUCUC CACC UUCAAGCU     GAU UCUCU      UUUCAGAUUU   UUUA       UUAUU  AU   G     ||||||| |||||||| |||| ||||||||     ||| |||||      ||||||||||   ||||       |||||  ||     AAUUUGG AAACAGGG GUGG AAGUUUGA     UUG AGAGG      AAAGUCUAAA   AGAU       AAUAA  UG   U CGUC       C        C    U        CAUAU   U     UAUAUA          UUU    UUUUUUU     -U  UCU |
Stem-loop sequence | AUUAAGCUUUUGUCUCUCACCUUCAAGCUCUCGAUUUCUCUCUGUUUCAGAUUUUUUUUUAUUUAUUUUAUUUUAUUUGGUUCUGUUAAUAAUUUUUUUUAGAUUUAAAUCUGAAAAUAUAUGGAGAUGUUUAUACAGUUUGAAUGGUGCGGGACAAACGGUUUAACUGC |