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BaseInfo

ncRNA ID novel_bra_miR379
Species Brassica rapa
Class miRNA
Genome position ChrA7:17434569-17434688 [+]
Reference genome Brapa_1.0
Source SRR1592477
Length 21
Mature sequence(if miRNA) 1 - AUUGAGAAAAUGGAGUGGGAA - 21
Stem-loop(if miRNA) --                        A   A                  G       CAU
  AUUGAGAAAAUGGAGUGGGAAAUG AGU AUGAACAAAAAAUAAAAG AUUACUC   U
  |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
  UAAUUCUUUUAUCUUACCUUUUAC UCA UACUUGUUUUUUAUUUUC UAAUGAG   U
UU                        C   C                  G       AUA
Stem-loop sequence AUUGAGAAAAUGGAGUGGGAAAUGAAGUAAUGAACAAAAAAUAAAAGGAUUACUCCAUUUAUAGAGUAAUGCUUUUAUUUUUUGUUCAUCACUCCAUUUUCCAUUCUAUUUUCUUAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009112636.2
ncRNA:21   AAGGGUGAGGUAAAAGAGUUA   1
  **|==|||||||||||||||*
targets:1715   ACCUUACUCCAUUUUCUCAAG   1735

3.0 PREDICTED: Brassica rapa leucine-rich repeat receptor-like protein kinase PXL1 (LOC103836383), mRNA leucine-rich repeat receptor-like protein kinase PXL1(LOC103836383) coding protein psRNATarget