ncRNA ID | novel_bra_miR379 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:17434569-17434688 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592477 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AUUGAGAAAAUGGAGUGGGAA - 21 |
Stem-loop(if miRNA) |
--                        A   A                  G       CAU   AUUGAGAAAAUGGAGUGGGAAAUG AGU AUGAACAAAAAAUAAAAG AUUACUC   U   |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||   UAAUUCUUUUAUCUUACCUUUUAC UCA UACUUGUUUUUUAUUUUC UAAUGAG   U UU                        C   C                  G       AUA |
Stem-loop sequence | AUUGAGAAAAUGGAGUGGGAAAUGAAGUAAUGAACAAAAAAUAAAAGGAUUACUCCAUUUAUAGAGUAAUGCUUUUAUUUUUUGUUCAUCACUCCAUUUUCCAUUCUAUUUUCUUAAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009112636.2 |
|
3.0 | PREDICTED: Brassica rapa leucine-rich repeat receptor-like protein kinase PXL1 (LOC103836383), mRNA | leucine-rich repeat receptor-like protein kinase PXL1(LOC103836383) | coding protein | psRNATarget |