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BaseInfo

ncRNA ID novel_bra_miR377
Species Brassica rapa
Class miRNA
Genome position ChrA6:531866-531960 [-]
Reference genome Brapa_1.0
Source SRR1592477;SRR1592478
Length 21
Mature sequence(if miRNA) 1 - AAUGGAGUGGGAAAUGGAGUA - 21
Stem-loop(if miRNA) --      A           ----------------       -----U        U
  CUCCAU UCUCACUCCAU                AAUAAAA      UUACUCCA A
  |||||| |||||||||||                |||||||      ||||||||
  GAGGUA AGGGUGAGGUA                UUGUUUU      AAUGAGGU A
AU      A           AUACCUCACUACUUGU       UUCUCU        A
Stem-loop sequence CUCCAUAUCUCACUCCAUAAUAAAAUUUACUCCAUAAAUGGAGUAAUCUCUUUUUUGUUUGUUCAUCACUCCAUAAUGGAGUGGGAAAUGGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009123752.2
ncRNA:21   AUGAGGUAAAGGGUGAGGUAA   1
  ||=||=*||||||||||||||
targets:1620   UAUUCUCUUUCCCACUCCAUU   1640

3.0 PREDICTED: Brassica rapa trafficking protein particle complex II-specific subunit 120 homolog (LOC103846756), mRNA trafficking protein particle complex II-specific subunit 120 homolog(LOC103846756) coding protein psRNATarget