Search result

BaseInfo

ncRNA ID	novel_bra_miR376
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:2396024-2396114 [-]
Reference genome	Brapa_1.0
Source	SRR1592477
Length	24
Mature sequence(if miRNA)	1 - AAAAUAGAGUAGAAAAUAGAGUGA - 24
Stem-loop(if miRNA)	--                  AAA       ------   CUAUCAUAG   ACUCUAUUUUUUACUCUA   UAGAGUA      ACU         A   ||||||||||||||||||   |||||||      |||         G   UGAGAUAAAAGAUGAGAU   AUCUCAU      CUC         U AG                  AAA       GGUAAC   GUUUGAGUU
Stem-loop sequence	ACUCUAUUUUUUACUCUAAAAUAGAGUAACUCUAUCAUAGAGUUUGAGUUUGCUCCAAUGGUACUCUAAAAUAGAGUAGAAAAUAGAGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009125448.2	ncRNA:24   AG-UGAGAUAAAAGAUGAGAUAAAA   1   ||-|||||=|||||||||||=|||| targets:1307   UCUACUCUGUUUUCUACUCUGUUUU   1331 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103848564 (LOC103848564), mRNA	uncharacterized LOC103848564(LOC103848564)	coding protein	psRNATarget
XM_009123111.2	ncRNA:24   AGUGAGAUAAAAGAUGAGAUAAAA   1   |===|||=|||||||||||=|||| targets:2448   UUGUUCUGUUUUCUACUCUGUUUU   2471 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103846206 (LOC103846206), mRNA	uncharacterized LOC103846206(LOC103846206)	coding protein	psRNATarget