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BaseInfo

ncRNA ID	novel_bra_miR373
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:20504842-20504919 [+]
Reference genome	Brapa_1.0
Source	SRR1592477;SRR1485259;SRR1485260
Length	21
Mature sequence(if miRNA)	1 - AUAAAUCCCAAGCAUCAUCCA - 21
Stem-loop(if miRNA)	--                     CC    U    C  GA   AUAAAUCCCAAGCAUCAUCCA  UUAU AGCC UU  A   |||||||||||||||||||||  |||| |||| ||   UAUUUAGGGUUCGUAGUAGGU  AAUG UCGG AG  C UU                     AA    U    A  UA
Stem-loop sequence	AUAAAUCCCAAGCAUCAUCCACCUUAUUAGCCCUUGAACAUGAAGGCUUGUAAAAUGGAUGAUGCUUGGGAUUUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009112378.2	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*||||||||||||||*|||| targets:1631   UCGAUGAUGCUUGGGAGUUAU   1651 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC103836144), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC103836144)	coding protein	psRNATarget
XM_009119806.2	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*|||||||||||||||*||| targets:1767   UCGAUGAUGCUUGGGAUCUAU   1787 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC103843103), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC103843103)	coding protein	psRNATarget
XM_018655415.1	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   **||*||||||||||||||=| targets:784   CAGAAGAUGCUUGGGAUUUGU   804 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable disease resistance protein At1g12280 (LOC103843924), mRNA	NA	coding protein	psRNATarget
XM_018654457.1	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*|||||*|||||||||*||| targets:3585   UCGAUGAAGCUUGGGAUCUAU   3605 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12300, mitochondrial (LOC103843107), mRNA	NA	coding protein	psRNATarget