| ncRNA ID | novel_bra_miR348 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA3:7119032-7119186 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1592477 |
| Length | 24 |
| Mature sequence(if miRNA) | 132 - AGUAAAUUAUGGAGUGGAGAUGGA - 155 |
| Stem-loop(if miRNA) |
-UAC -GC AA A G AGAA ---GU A CAU UUUCCACUCCAUAAUUUACU AAAAUGGAGUG AAAU GAGUA UGA ACAAAAAA GAUU CUC A |||||||||||||||||||| ||||||||||| |||| ||||| ||| |||||||| |||| ||| AGAGGUGAGGUAUUAAAUGA UUUUAUCUCAC UUUA CUUAU ACU UGUUUUUU UUAA GAG A AGGU AGU CC C - ---- AUUUU - AUA |
| Stem-loop sequence | UACUUUCCACUCCAUAAUUUACUGCAAAAUGGAGUGAAAAAUAGAGUAGUGAAGAAACAAAAAAGUGAUUACUCCAUAAAUAGAGAAUUUUUUAUUUUUUGUUCAUAUUCCAUUUCCCACUCUAUUUUUGAAGUAAAUUAUGGAGUGGAGAUGGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009137393.2 |
|
1.0 | PREDICTED: Brassica rapa zinc finger protein AZF2-like (LOC103859816), mRNA | zinc finger protein AZF2-like(LOC103859816) | coding protein | psRNATarget | |||||||||
| XM_018655293.1 |
|
2.0 | PREDICTED: Brassica rapa 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 1-like (LOC103845591), transcript variant X3, mRNA | NA | coding protein | psRNATarget |