ncRNA ID | novel_bra_miR343 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:18894449-18894661 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1592477 |
Length | 24 |
Mature sequence(if miRNA) | 190 - AUAGAGUGUGAUUGGAGAUGGUUG - 213 |
Stem-loop(if miRNA) |
--AG         AG         UU           A     A                             A     UA     -UAUUUC       U           CAUUUCCAA  GCACUCUAU  UUUCCUCUAUA UUUAC CUAAAAUAGAGUAACUCUAUUAUAGAGUU AAUUU  CUCUA       ACUCUAU AUAGAGU     |||||||||  |||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||  |||||       ||||||| ||||||A     GUAGAGGUU  UGUGAGAUA  AAAGGAGAUAU AAGUG GAUUUUAUCUCAUUGAGAUAAUAUCUCAA UUAAA  GAGGU       UGAGAUA UAUCUCA GUUG         AG         UU           A     A                             C     -C     UACCAAA       U       |
Stem-loop sequence | AGCAUUUCCAAAGGCACUCUAUUUUUUCCUCUAUAAUUUACACUAAAAUAGAGUAACUCUAUUAUAGAGUUAAAUUUUACUCUAUAUUUCACUCUAUUAUAGAGUAACUCUAUUAUAGAGUAAACCAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUACUCUAUUUUAGAGUGAAAUAUAGAGGAAAUUAUAGAGUGUGAUUGGAGAUGGUUG |