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BaseInfo

ncRNA ID novel_bra_miR343
Species Brassica rapa
Class miRNA
Genome position ChrA3:18894449-18894661 [+]
Reference genome Brapa_1.0
Source SRR1592477
Length 24
Mature sequence(if miRNA) 190 - AUAGAGUGUGAUUGGAGAUGGUUG - 213
Stem-loop(if miRNA) --AG         AG         UU           A     A                             A     UA     -UAUUUC       U      
    CAUUUCCAA  GCACUCUAU  UUUCCUCUAUA UUUAC CUAAAAUAGAGUAACUCUAUUAUAGAGUU AAUUU  CUCUA       ACUCUAU AUAGAGU
    |||||||||  |||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||  |||||       ||||||| ||||||A
    GUAGAGGUU  UGUGAGAUA  AAAGGAGAUAU AAGUG GAUUUUAUCUCAUUGAGAUAAUAUCUCAA UUAAA  GAGGU       UGAGAUA UAUCUCA
GUUG         AG         UU           A     A                             C     -C     UACCAAA       U      
Stem-loop sequence AGCAUUUCCAAAGGCACUCUAUUUUUUCCUCUAUAAUUUACACUAAAAUAGAGUAACUCUAUUAUAGAGUUAAAUUUUACUCUAUAUUUCACUCUAUUAUAGAGUAACUCUAUUAUAGAGUAAACCAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUACUCUAUUUUAGAGUGAAAUAUAGAGGAAAUUAUAGAGUGUGAUUGGAGAUGGUUG