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BaseInfo

ncRNA ID novel_bra_miR341
Species Brassica rapa
Class miRNA
Genome position ChrA2:25285047-25285154 [-]
Reference genome Brapa_1.0
Source SRR1592476
Length 24
Mature sequence(if miRNA) 1 - AUGGAGUGAAAUAUGGAGUUGGGU - 24
Stem-loop(if miRNA) --            C          A      UUACUC        U     GAG
  CCAAUUUUAUAU UCAUUUCAUA UGGAGU      AAUAAAUA AAAUA   U
  |||||||||||| |||||||||| ||||||      |||||||| |||||
  GGUUGAGGUAUA AGUGAGGUAU AUCUCA      UUGUUUAU UUUGU   A
UG            A          G      --UUAC        U     AUA
Stem-loop sequence CCAAUUUUAUAUCUCAUUUCAUAAUGGAGUUUACUCAAUAAAUAUAAAUAGAGUAAUAUGUUUUUAUUUGUUCAUUACUCUAGUAUGGAGUGAAAUAUGGAGUUGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018653025.1
ncRNA:24   UGGGUUGAGGUAUAAAGUGAGGUA   1
  ||||||||||||||||=||||||*
targets:330   ACCCAACUCCAUAUUUUACUCCAA   353

2.5 PREDICTED: Brassica rapa uncharacterized LOC108869048 (LOC108869048), mRNA NA coding protein psRNATarget