ncRNA ID | novel_bra_miR341 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:25285047-25285154 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1592476 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUGGAGUGAAAUAUGGAGUUGGGU - 24 |
Stem-loop(if miRNA) |
--            C          A      UUACUC        U     GAG   CCAAUUUUAUAU UCAUUUCAUA UGGAGU      AAUAAAUA AAAUA   U   |||||||||||| |||||||||| ||||||      |||||||| |||||   GGUUGAGGUAUA AGUGAGGUAU AUCUCA      UUGUUUAU UUUGU   A UG            A          G      --UUAC        U     AUA |
Stem-loop sequence | CCAAUUUUAUAUCUCAUUUCAUAAUGGAGUUUACUCAAUAAAUAUAAAUAGAGUAAUAUGUUUUUAUUUGUUCAUUACUCUAGUAUGGAGUGAAAUAUGGAGUUGGGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018653025.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC108869048 (LOC108869048), mRNA | NA | coding protein | psRNATarget |